Rakesh Upadhyay - Publications

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  1. Baek, I., Cha, M., Lim, S., Irish, B.M., Oh, S., Upadhyay, R.K, Bhatt, J., Kim, M.S., Meinhardt, L.W., Park, S., Ahn, E.J. Integrated phenotypic analysis, predictive modeling, and identification of novel trait-associated loci in a diverse Theobroma cacao BMC Plant Biology, 25, 1050.
  2. Upadhyay R.K., Shao, J., Maul, J.E., Schomberg, H., Handa, A.K., Roberts, D.P., and Mattoo, A.K. Unlocking the role of novel primary/di-amine oxidases in crop improvement: Tissue specificity leads to specific roles connected to abiotic stress, hormone responses and sensing nitrogen. Journal of Plant Physiology, 2024, 303:154374
  3. Upadhyay R.K., Shao, J., Roberts, G. E. and Mattoo, A.K. Comparative genomics and evidence for an unusual functional polyamine oxidation pathway in aquatic duckweed (Spirodela polyrhiza ). Current Plant Biology, 2024, 39, 100359.
  4. Upadhyay, R.K., Motyka, V.; Pokorna, E.; Filepova, R., Dobrev, P.I.; Handa, A.K. and Mattoo. A.K. A comprehensive endogenous phytohormone metabolite landscape identifies new metabolites associated with tomato fruit. Plant Growth Regulation, 2024, 104, 343-357.
  5. Upadhyay R.K., Motyka, , Pokorna, E., Dobrev, P. I., Lacek, J., Shao, J., Lewers, K.S. and Mattoo, A.K. Comprehensive profiling of endogenous phytohormones and expression analysis of 1- aminocyclopropane-1-carboxylic acid synthase gene family during fruit development and ripening in octoploid strawberry (Fragaria×ananassa). Plant Physiology and Biochemistry, 2023, 196, 186-196.
  6. Gupta, A., Upadhyay, R. K., Prabhakar, R., Garg, R., Sane, A.P. SlDREB3, a negative regulator of ABA responses, controls seed germination, fruit size and the onset of ripening in tomato. Plant Science, 2022, 319, 111249.
  7. Upadhyay R.K., Shao, J. and Mattoo, A.K. Genomic analysis of the polyamine biosynthesis pathway in duckweed Spirodela polyrhiza : presence of the arginine decarboxylase pathway, absence of the ornithine decarboxylase pathway, and response to abiotic stresses. Planta, 2021, 254, 108.
  8. Upadhyay R.K., Fatima T., Handa A.K. and Mattoo A.K. Differential Association of Free, Conjugated, and Bound Forms of Polyamines and Transcript Abundance of Their Biosynthetic and Catabolic Genes During Drought/Salinity Stress in Tomato (Solanum lycopersicum ) Leaves. Frontiers in Plant Sciences, 2021, 12:743568.
  9. Upadhyay R.K., Edelman, M.; Mattoo, A.K. Identification, Phylogeny, and Comparative Expression of the Lipoxygenase Gene Family of the Aquatic Duckweed, Spirodela polyrhiza, during Growth and in Response to Methyl Jasmonate and Salt. International Journal of Molecular Sciences, 2020, 21, 9527.
  10. Upadhyay R.K., Fatima, T.; Handa, A.K.; Mattoo, A.K. Polyamines and Their Biosynthesis/Catabolism Genes are Differentially Modulated in Response to Heat Versus Cold Stress in Tomato Leaves (Solanum lycopersicum ). Cells, 2020, 9, 1749.
  11. Upadhyay R.K., Tucker M. L. and Mattoo A. K. Ethylene and RIPENING INHIBITOR Modulate Expression of 7A, B Class I Small Heat-Shock Protein Genes During Tomato Fruit Ripening. Frontiers in Plant Sciences, 2020, 11:975.
  12. Upadhyay R.K., Handa, A.K., Mattoo, A.K. Transcript Abundance Patterns of 9- and 13- Lipoxygenase Subfamily Gene Members in Response to Abiotic Stresses (Heat, Cold, Drought or Salt) in Tomato (Solanum lycopersicum L.) Highlights Member-Specific Dynamics Relevant to Each Stress. Genes, 2019, 10, 683.
  13. Mattoo A.K., Upadhyay, R.K. Plant Hormones: Some Glimpses on Biosynthesis, Signaling Networks, and In: Sudhir Sopory (Editor) Sensory Biology of Plants, 2019, Springer, Singapore.
  14. Upadhyay R.K. Mattoo, A. K. Genome-Wide Identification of Tomato (Solanum lycopersicum ) Lipoxygenases Coupled with Expression Profiles During Plant Development and in Response to Methyl-Jasmonate and Wounding. Journal of Plant Physiology, 2018, 231:318-328.
  15. Shukla, V*., Upadhyay, K*., Tucker, M.L., Giovannoni, J. J., Rudrabhatla, S.V., and Mattoo, A. K. Transient regulation of three clustered tomato class-I small heat-shock chaperone genes by ethylene is mediated by SlMADS-RIN transcription factor. Scientific Reports (NPG), 2017, 7, 6474.
  16. Upadhyay R.K., Gupta, A., Soni, D., Garg R., Pathre U. V, Nath P, Sane A. P. Ectopic expression of a tomato DREB gene affects several ABA processes and influences plant growth and root architecture in an age dependent manner. Journal of Plant Physiology, 2017, 214:97-107.
  17. Mattoo, A. K., Upadhyay, R. K., and Rudrabhatla, S. Abiotic stress in crops: candidate genes, osmolytes, polyamines and biotechnological intervention. In: Pandey GK (Editor) Elucidation of Abiotic Stress Signaling in Plants: A Functional Genomic Perspective, 2017, Springer, New
  18. Mattoo, K., Fatima, T., Upadhyay, R. K., Handa, A. K. Polyamines in plants: biosynthesis from arginine, and metabolic, physiological and stress-response roles. Amino acids in higher plants, 2015, 177-194.
  19. Upadhyay R.K., Gupta, , Ranjan, S., Singh R., Pathre U.V., Nath, P., Sane, A.P. The EAR Motif Controls the Early Flowering and Senescence Phenotype Mediated by Over-Expression of SlERF36 and Is Partly Responsible for Changes in Stomatal Density and Photosynthesis. Plos One, 2014, 9(7): e101995.
  20. Upadhyay R.K., Soni D.K, Singh R., Dwivedi U.N., Pathre U.V., Nath P., Sane A.P. SlERF36, an EAR-motif-containing ERF gene from tomato, alters stomatal density and modulates photosynthesis and Journal of Experimental Botany, 2013, 64, 3237–3247.